PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10285.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 589aa    MW: 68773.5 Da    PI: 4.9228
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10285.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.51.3e-1133100571
                   DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkk 71 
                                wsee +i+lL+Gli+f+++ +k  + +   f+++++k+++++   k+q++e i rLK Kf  +  +
  Sme2.5_10285.1_g00002.1  33 HKWSEEEQITLLKGLIEFESQCEKYFQIEPCIFHDYIQKKLNVQsLDKRQITEEIDRLKAKFIVDHWE 100
                              67*********************88888*************9973689**************876544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.3E-832114IPR007592Protein of unknown function DUF573
SMARTSM003430.0071165181IPR001878Zinc finger, CCHC-type
PfamPF000983.5E-4165180IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.631166180IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSSNFSDASK AIEEEQIACE KSDSFTTTKA PHHKWSEEEQ ITLLKGLIEF ESQCEKYFQI  60
EPCIFHDYIQ KKLNVQSLDK RQITEEIDRL KAKFIVDHWE KEKPPFDDLV FQLSREACSE  120
VSGHQKFRAQ SSQSQASVTQ GLRGKPPCHK YGRLHLGKYH EGTNACYRCR QIDHFQNECP  180
MRRRGDGDDK DQSSTAPPAS DNQIVATSNT GGVQTVYMRW TIDRIRKLHQ MLSQVCFEPF  240
HMMFSSMSHR KPLLSLKKTF FYNFFPSKEE EEACKLNNTP WVVTRELTEI RDLYPPPKID  300
LENPWQIKKR ILCEEIIRGT LVIPFFEMFE YILRYWTLDM AKDLVENGYG VFVDLWDVTE  360
ENDPKKYVGG SVCLRKLYND NYSLSCIELF NDRGLGIGHE IGLYWDFRSS CLMFKLFSQI  420
KKKITPDEVF VGKLLIPFFE TFEYILRYWT LDMTKSLENG CRVRVNVWDV TEENAIKKYE  480
VPTQVEDEVH DDHPQDADDE GIPQEDEPEE ENIDGGHTQP PIAGESPVLL RRSSRNVQPS  540
TRYPADQWVT LTDEGEPESF SEAIDDENNE KWIKAMQDEI KSLHENKTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-06DNA-binding storekeeper protein-related transcriptional regulator